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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25720410_25722474_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25720410 - 25722474
Intron Length:
2065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCTTTGACA
Flanking Amino Acid:
PDEVRAWTIRKGTKAPQAAG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
75.9
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.3
0.73
0.9
79.7
32.4
Minor 5ss
42.1
-0.9
3.1
51.6
45.1
Minor BPS
78
0.87
1.1
84.01
28.9

Associated Gene:

Gene:
OLA1
Ensembl Gene ID:
ENSAPLG00000008147
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008490
25716118 - 25812294
96177