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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25722572_25723255_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25722572 - 25723255
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAATTAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TATACGTTGAAT
Flanking Amino Acid:
QKYLEENMTQSALAKIIKAG
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
69.4
37.6
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.3
-1.7
2.7
40.9
45.4
Minor BPS
49.8
0.07
2.2
74.23
42.2

Associated Gene:

Gene:
OLA1
Ensembl Gene ID:
ENSAPLG00000008147
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008490
25716118 - 25812294
96177