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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25723397_25755193_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25723397 - 25755193
Intron Length:
31797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
TTGTTGTCTACA
Flanking Amino Acid:
EKDYIRKKNKWLIKIKEWVD
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
82.5
0.73
0.9
76.6
37.7
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
44.4
-0.4
2.4
62.69
43.6

Associated Gene:

Gene:
OLA1
Ensembl Gene ID:
ENSAPLG00000008147
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008490
25716118 - 25812294
96177