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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25810623_25812193_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25810623 - 25812193
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TATTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
KIGIVGLPNVGKSTFFNVLT
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.2
55.6
43.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
84.4
0.77
0.9
81.3
34.8
Minor 5ss
34.9
-1.7
3.6
40.6
46
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
OLA1
Ensembl Gene ID:
ENSAPLG00000008147
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008490
25716118 - 25812294
96177