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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25847391_25848779_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25847391 - 25848779
Intron Length:
1389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCCTACAATA
Flanking Amino Acid:
RNLTANDPSQEFVASEGDDD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.7
0.47
0.9
62.6
43.2
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
48.5
-0.1
1.8
63.09
36.9

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179