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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25848887_25862028_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25848887 - 25862028
Intron Length:
13142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTTGTGAACA
Flanking Amino Acid:
NASSVSSDGSGPSMHPSELI
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72.7
44.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
76.2
0.59
1
73.3
40.9
Minor 5ss
39.7
-1.2
3.2
57.4
46.9
Minor BPS
60.6
0.33
2.2
79.77
36.3

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179