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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25862147_25862356_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25862147 - 25862356
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
GTTAGGTAAATT
Flanking Amino Acid:
NIRDQPFGIQVRNVRCIKCH
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
80.1
38.1
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
83.9
0.76
0.7
82
30
Minor 5ss
30.2
-2.3
3.8
42.9
44.7
Minor BPS
42.1
-0.5
2.5
64.88
45.9

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179