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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25862816_25862908_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25862816 - 25862908
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAAAT
Flanking Amino Acid:
PGAKKEEAKEQEGETEYKFE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
64.2
0.52
1.7
84.29
36.6

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179