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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25864570_25865106_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25864570 - 25865106
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
YLKEQESYDNRLLMGDERVK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.8
82
28.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179