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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25865202_25866037_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25865202 - 25866037
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTGTTTTTACTA
Flanking Amino Acid:
HPASKSNIKKVWMAEQKISY
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
78.9
0.65
0.9
74.6
40
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
60.7
0.33
1.6
69.78
37.7

Associated Gene:

Gene:
CIR1
Ensembl Gene ID:
ENSAPLG00000008087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008441
25844931 - 25866109
21179