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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25871232_25871665_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25871232 - 25871665
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATTT
Flanking Amino Acid:
HFFTGTPDPARSVFKPFIFV
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.5
37.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
30.7
-2.2
3.2
37.4
47.3
Minor BPS
53.6
0.19
1.7
70.13
42.3

Associated Gene:

Gene:
SCRN3
Ensembl Gene ID:
ENSAPLG00000008066
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008382
25866250 - 25873473
7224