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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25871847_25873314_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25871847 - 25873314
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTGGTGAAAT
Flanking Amino Acid:
SAAVAMEAMKDEGKEMLQKI
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
44.6
-0.3
2.5
69.93
46.5

Associated Gene:

Gene:
SCRN3
Ensembl Gene ID:
ENSAPLG00000008066
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008382
25866250 - 25873473
7224