About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25892703_25893872_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
25892703 - 25893872

Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATT|GTATGTAGT

5'SS Class:
major

3'SS Sequence:
ATTCCTTTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TGTTCAT

U12 Branch Point Sequence:
TTCTGTTTGATT

Flanking Amino Acid:
AAQFNMEVGIITSGMVISTF

Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.3
0.46
1.1
69.2
41

Major BPS
84.8
0.86
1
85.7
34.9

Major PPT
86.2
0.81
0.7
80.9
30.3

Minor 5ss
46.1
-0.4
2.6
65.5
40

Minor BPS
60.3
0.4
1.8
78.04
39.4

Associated Gene:

Gene:
GPR155

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

25878661 - 25899437
20777

25878661 - 25926828
48168