About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25899413_25924586_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25899413 - 25924586
Intron Length:
25174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AGTTAATGAATA
Flanking Amino Acid:
PSKLARNESRDEITACSFFW
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
48.3
-0.1
1.8
62.36
37

Associated Gene:

Gene:
GPR155
Ensembl Gene ID:
ENSAPLG00000008000
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038631
25878661 - 25926828
48168