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Intron Name: Anas_platyrhynchos_platyrhynchos_7_25980134_25981256_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25980134 - 25981256

Intron Length:

1123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCTCG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACAGAA

U12 Branch Point Sequence:

CCGAACAGAAAT

Flanking Amino Acid:

THTMPHWVRKIFIDTIPNIM

Intron Amino Acid Position:

334

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

39.3

Major BPS

49.3

-0

0.9

44.7

28.3

Major PPT

89.8

0.89

0.7

87.9

29.4

Minor 5ss

38.7

-1.3

2.9

47.6

Minor BPS

-0.7

1.8

49.02

43.3

Associated Gene:

Gene:

CHRNA1

Ensembl Gene ID:

ENSAPLG00000007803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036940

25976694 - 25984546

7853

ENSAPLT00000008121

25976694 - 25986139

9446