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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_25984547_25986099_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25984547 - 25986099
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGAG
5'SS Class:
major
3'SS Sequence:
CTGCCCTTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ATCCCACTGACA
Flanking Amino Acid:
RRVFLLVFSAAGLALCYEHE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.6
40.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
74.3
0.55
0.8
68.5
31.7
Minor 5ss
35
-1.7
3.4
45.9
49.3
Minor BPS
47
-0.2
1.9
60.66
38.5

Associated Gene:

Gene:
CHRNA1
Ensembl Gene ID:
ENSAPLG00000007803
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008121
25976694 - 25986139
9446