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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26000430_26001418_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26000430 - 26001418
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTATA
5'SS Class:
major
3'SS Sequence:
ATCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TGACCATGAACA
Flanking Amino Acid:
DAYPKFIESAKTTDPDEQLE
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81
33.2
Major BPS
67.6
0.44
1.2
75
40
Major PPT
76.6
0.6
1
73
41.6
Minor 5ss
40
-1.1
3
50.9
40
Minor BPS
53
0.09
1.7
65.68
39.3

Associated Gene:

Gene:
CHN1
Ensembl Gene ID:
ENSAPLG00000007680
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008026
25997698 - 26093268
95571