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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26001557_26002739_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26001557 - 26002739
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCCTTCTTCACA
Flanking Amino Acid:
IEDVKMAFDRDGEKADISVN
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.6
32.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.3
0.61
0.8
72.5
31.2
Minor 5ss
41.8
-0.9
3
59.5
44.9
Minor BPS
56.4
0.2
1.8
62.92
43.8

Associated Gene:

Gene:
CHN1
Ensembl Gene ID:
ENSAPLG00000007680
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008026
25997698 - 26093268
95571