About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26003715_26014618_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26003715 - 26014618
Intron Length:
10904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CGTCCTTTCATT
Flanking Amino Acid:
GLIAQGVKCADCGLNVHKQC
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.8
0.83
0.7
85.4
28.6
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
53.4
0.19
1.8
69.55
42

Associated Gene:

Gene:
CHN1
Ensembl Gene ID:
ENSAPLG00000007680
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008026
25997698 - 26093268
95571