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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26014704_26025093_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26014704 - 26025093
Intron Length:
10390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TACTGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTTCTATAATT
Flanking Amino Acid:
PKYEKVHNFKVHTFRGPHWC
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
78.7
0.65
0.9
69.4
41.4
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
75.9
0.89
1.5
92.75
29.1

Associated Gene:

Gene:
CHN1
Ensembl Gene ID:
ENSAPLG00000007680
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008026
25997698 - 26093268
95571