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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26063796_26071351_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26063796 - 26071351
Intron Length:
7556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TCAATGTGAAAC
Flanking Amino Acid:
HPRRITCTCEVENRPKYYGR
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
64.7
0.37
1
73
31.5
Major PPT
87
0.83
0.7
81.2
36.5
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
41.7
-0.6
2.1
49.73
40.2

Associated Gene:

Gene:
CHN1
Ensembl Gene ID:
ENSAPLG00000007680
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008026
25997698 - 26093268
95571