Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26135314_26135635_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26135314 - 26135635

Intron Length:

322

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTTAC

5'SS Class:

major

3'SS Sequence:

ATTCCTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTTCTTTTATA

Flanking Amino Acid:

TQAPSSNRPIVPVPGPFPLL

Intron Amino Acid Position:

191

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

1.1

71.4

35.2

Major BPS

79.2

0.73

75.3

39.4

Major PPT

87.2

0.84

0.7

84.9

29.1

Minor 5ss

42.5

-0.8

2.8

53.4

43.8

Minor BPS

72.9

0.71

1.5

82.82

31.5

Associated Gene:

Gene:

ATF2

Ensembl Gene ID:

ENSAPLG00000007673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041697

26110753 - 26156455

45703

ENSAPLT00000021072

26110753 - 26153073

42321

ENSAPLT00000008002

26110753 - 26156455

45703