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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26135815_26141842_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26135815 - 26141842
Intron Length:
6028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGAA
5'SS Class:
major
3'SS Sequence:
GTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATTTTACAAACT
Flanking Amino Acid:
HPESTTSDEKEVSLQQTAQP
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.3
34.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
86
0.81
0.7
84.9
29.9
Minor 5ss
25.2
-2.9
3
29.7
43.1
Minor BPS
48.1
-0
2.2
76.01
40.3

Associated Gene:

Gene:
ATF2
Ensembl Gene ID:
ENSAPLG00000007673
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041697
26110753 - 26156455
45703
ENSAPLT00000021072
26110753 - 26153073
42321
ENSAPLT00000008002
26110753 - 26156455
45703