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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26141972_26144171_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26141972 - 26144171
Intron Length:
2200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
CTATTGATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TAGTAATTAACT
Flanking Amino Acid:
KKASEDDIKKMPLDLSPLAT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
68.7
0.42
0.9
66.5
39.2
Minor 5ss
48.3
-0.2
2.3
59
39.8
Minor BPS
63
0.48
1.8
79.9
41.3

Associated Gene:

Gene:
ATF2
Ensembl Gene ID:
ENSAPLG00000007673
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041697
26110753 - 26156455
45703
ENSAPLT00000021072
26110753 - 26153073
42321
ENSAPLT00000008002
26110753 - 26156455
45703