About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26144291_26147276_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26144291 - 26147276
Intron Length:
2986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATA
5'SS Class:
major
3'SS Sequence:
AACTTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTGTAAACT
Flanking Amino Acid:
PARNDSVIVADQTPTPTRFL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
80.9
32.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
75
0.56
0.9
70.9
38.8
Minor 5ss
35.8
-1.6
2.6
41.2
39
Minor BPS
59.7
0.38
2.3
86.99
39.2

Associated Gene:

Gene:
ATF2
Ensembl Gene ID:
ENSAPLG00000007673
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041697
26110753 - 26156455
45703
ENSAPLT00000021072
26110753 - 26153073
42321
ENSAPLT00000008002
26110753 - 26156455
45703