Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26149687_26150281_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

26149687 - 26150281

Intron Length:

595

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTAATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

CTCTTCTTAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.6

Major BPS

88.7

0.96

0.8

36.5

Major PPT

78.7

0.65

0.9

73.4

34.8

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

73.7

0.74

1.2

74.1

38.6

Associated Gene:

Gene:

ATF2

Ensembl Gene ID:

ENSAPLG00000007673

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041697

26110753 - 26156455

45703

ENSAPLT00000021072

26110753 - 26153073

42321

ENSAPLT00000008002

26110753 - 26156455

45703