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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26165637_26166012_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26165637 - 26166012
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTTAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATGT
Flanking Amino Acid:
FSRPEVRTGEGNSTLNGAQN
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75.1
37.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
46.3
-0.4
2.9
67
44.3
Minor BPS
48.8
-0
2.1
72.47
44.4

Associated Gene:

Gene:
ATP5MC3
Ensembl Gene ID:
ENSAPLG00000025020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019010
26163596 - 26167078
3483