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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26166091_26166999_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26166091 - 26166999
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
CCTCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTTATAACT
Flanking Amino Acid:
CAKLAASPALIRAGSRILYR
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
58.5
40.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.9
0.76
0.7
75.7
32.7
Minor 5ss
31.4
-2.1
3.2
35.7
42.1
Minor BPS
67.3
0.62
1.6
83.99
37.1

Associated Gene:

Gene:
ATP5MC3
Ensembl Gene ID:
ENSAPLG00000025020
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019010
26163596 - 26167078
3483