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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2619282_2626683_R

Intron Information:

Intron Rank:
149638
Intron Class:
major
Intron Phase:
Intron Coordinates:
2619282 - 2626683
Intron Length:
7402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGCTATATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
83.8
0.76
0.7
76.9
31.8
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
47.2
-0.2
1.8
59.43
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028028
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027106
2619138 - 2656440
37303