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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26238415_26241218_R

Intron Information:

Intron Rank:
152053
Intron Class:
major
Intron Phase:
Intron Coordinates:
26238415 - 26241218
Intron Length:
2804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TCTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.3
0.84
0.7
85.3
27.7
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
49.9
-0
1.9
65
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029380
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041868
26235925 - 26241405
5481