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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26260916_26265725_R

Intron Information:

Intron Rank:
149881
Intron Class:
major
Intron Phase:
Intron Coordinates:
26260916 - 26265725
Intron Length:
4810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ACATCCTGCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81.3
0.7
0.8
76.3
31.7
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
48.7
-0.1
1.9
58.37
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028190
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040330
26258753 - 26265779
7027