Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2633360_2639846_F

Intron Information:

Intron Rank:

149709

Intron Class:

major

Intron Phase:

Intron Coordinates:

2633360 - 2639846

Intron Length:

6487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CTATCTTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TGTTCAATGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

75.1

40.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

0.61

0.8

69.3

36.7

Minor 5ss

42.8

-0.8

3.4

64.4

Minor BPS

54.7

0.23

1.9

78.42

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030558

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034061

2632951 - 2656440

23490

ENSAPLT00000033366

2632951 - 2642348

9398