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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26382106_26383462_F

Intron Information:

Intron Rank:
140464
Intron Class:
major
Intron Phase:
Intron Coordinates:
26382106 - 26383462
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TCGTACTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
86.2
0.81
0.8
80.9
31.1
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
55.7
0.16
2
66.9
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025594
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042465
26381872 - 26385289
3418