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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26383608_26384999_F

Intron Information:

Intron Rank:
140465
Intron Class:
major
Intron Phase:
Intron Coordinates:
26383608 - 26384999
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACAATA
5'SS Class:
major
3'SS Sequence:
GTTCTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
76.9
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.7
0.71
0.8
78
35.4
Minor 5ss
37.2
-1.5
3
48.8
46.9
Minor BPS
72.6
0.57
1.8
79.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025594
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042465
26381872 - 26385289
3418