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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26441104_26446645_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26441104 - 26446645
Intron Length:
5542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
ATATTCTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TAAATGTTAAAT
Flanking Amino Acid:
GTSATPRPGQEIRQRTTAQR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.5
0.55
1
74
40.7
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
48.3
-0
2.1
67.98
42.2

Associated Gene:

Gene:
LNPK
Ensembl Gene ID:
ENSAPLG00000008383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008746
26428260 - 26446925
18666