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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26446698_26446778_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26446698 - 26446778
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
ERFDPESNAKEAELPTAGTS
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.4
0.62
1
74
40.3
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
LNPK
Ensembl Gene ID:
ENSAPLG00000008383
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008746
26428260 - 26446925
18666