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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_265011_266600_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
265011 - 266600
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAGGA
5'SS Class:
major
3'SS Sequence:
TTTATTCTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TAACACGTAATT
Flanking Amino Acid:
AACADDFTKMMTNDESASSI
Intron Amino Acid Position:
1325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
60.7
38.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.1
0.7
0.8
76.9
31.8
Minor 5ss
30
-2.3
3.3
36.1
42.6
Minor BPS
48.2
-0
2.1
68.88
41.6

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025359
264624 - 306968
42345
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099