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Intron Name: Anas_platyrhynchos_platyrhynchos_7_26520142_26520720_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26520142 - 26520720

Intron Length:

579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTATC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGATTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TCTCTCTTGATT

Flanking Amino Acid:

EAVAEKSNSSAIPQRSRKKR

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.9

85.3

32.2

Major BPS

83.8

0.84

73.6

41.8

Major PPT

84.2

0.77

0.8

81.1

35.5

Minor 5ss

38.9

-1.2

3.1

53.5

43.9

Minor BPS

69.3

0.69

1.2

79.75

36.6

Associated Gene:

Gene:

HOXD11

Ensembl Gene ID:

ENSAPLG00000020921

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044433

26518604 - 26521043

2440