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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26538547_26538932_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26538547 - 26538932
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATATAC
U12 Branch Point Sequence:
CCCCATATACCT
Flanking Amino Acid:
KEEKQQQLDPNNPAANWIHA
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
49.7
-0
1
48.4
35
Major PPT
85.8
0.81
0.7
83.8
24.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
39.9
-0.6
1.9
50.43
43.7

Associated Gene:

Gene:
HOXD9
Ensembl Gene ID:
ENSAPLG00000023656
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032198
26537874 - 26539726
1853
ENSAPLT00000022650
26536622 - 26539726
3105