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Intron Name: Anas_platyrhynchos_platyrhynchos_7_26549783_26550385_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26549783 - 26550385

Intron Length:

603

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGACGC

5'SS Class:

major

3'SS Sequence:

TTGTTTTAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAA

U12 Branch Point Sequence:

TTTGTTTTAAAC

Flanking Amino Acid:

AQMFPWMRPQAAPGRRRGRQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.3

52.9

44.5

Major BPS

69.5

0.49

1.2

63.7

43.9

Major PPT

76.5

0.6

74.1

39.5

Minor 5ss

27.3

-2.6

3.1

34.3

41.3

Minor BPS

65.8

0.48

1.5

74.65

36.2

Associated Gene:

Gene:

HOXD8

Ensembl Gene ID:

ENSAPLG00000008959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009313

26549303 - 26550681

1379