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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26562165_26577438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
26562165 - 26577438
Intron Length:
15274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GAGTTCTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.8
0.67
1
73.7
40.8
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
59
0.36
1.5
69.86
41.2

Associated Gene:

Gene:
HOXD3
Ensembl Gene ID:
ENSAPLG00000025122
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047882
26562138 - 26583550
21413