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Intron Name: Anas_platyrhynchos_platyrhynchos_7_26577523_26580972_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

26577523 - 26580972

Intron Length:

3450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAA

U12 Branch Point Sequence:

TCTTTTGTGTCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

79.3

29.7

Major BPS

0.3

34.1

Major PPT

73.3

0.52

0.7

64.8

30.7

Minor 5ss

37.5

-1.4

2.9

47.5

42.3

Minor BPS

38.2

-0.8

3.7

69.3

42.8

Associated Gene:

Gene:

HOXD3

Ensembl Gene ID:

ENSAPLG00000025122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047882

26562138 - 26583550

21413