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Intron Name: Anas_platyrhynchos_platyrhynchos_7_26581525_26581924_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26581525 - 26581924

Intron Length:

400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCCGCC

5'SS Class:

major

3'SS Sequence:

CTCTTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACCAAC

U12 Branch Point Sequence:

GGGGGACCAACG

Flanking Amino Acid:

SKQKSTCPPSGESCEDKSPP

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.3

59.1

41.7

Major BPS

44.6

-0.3

1.3

48.4

34.6

Major PPT

78.3

0.64

0.7

73.1

25.2

Minor 5ss

41.8

-0.9

3.5

59.5

45.4

Minor BPS

31.7

-1.5

2.1

31.18

40.2

Associated Gene:

Gene:

HOXD3

Ensembl Gene ID:

ENSAPLG00000025122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047882

26562138 - 26583550

21413