Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26618249_26619208_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26618249 - 26619208

Intron Length:

960

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGGGTACA

5'SS Class:

major

3'SS Sequence:

TTCCTTTCAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTCCTTTCAACA

Flanking Amino Acid:

ENAALYQQLKEDQILLSDNA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

67.6

39.4

Major BPS

84.4

0.85

1.1

34.5

Major PPT

80.1

0.68

0.8

76.9

30.3

Minor 5ss

28.7

-2.4

2.8

25.5

36.6

Minor BPS

58.4

0.26

1.5

68.33

38.3

Associated Gene:

Gene:

MTX2

Ensembl Gene ID:

ENSAPLG00000009123

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009525

26610417 - 26637977

27561