Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26631177_26633932_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26631177 - 26633932

Intron Length:

2756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTTCATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCTTACTAAAAT

Flanking Amino Acid:

RANAEYMSPSGKVPFIHVGN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

71.5

38.5

Major BPS

100

1.24

0.5

100

Major PPT

89.1

0.88

0.7

83.7

30.9

Minor 5ss

33.1

-1.9

3.1

38.5

40.7

Minor BPS

57.1

0.3

78.16

43.8

Associated Gene:

Gene:

MTX2

Ensembl Gene ID:

ENSAPLG00000009123

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009525

26610417 - 26637977

27561