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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26636115_26636695_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26636115 - 26636695
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTACCTTATCT
Flanking Amino Acid:
IGWAGKSLEQVLEDVDQCCQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
71.7
0.49
1
68.8
42.1
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
72.4
0.78
1.6
87.55
37.5

Associated Gene:

Gene:
MTX2
Ensembl Gene ID:
ENSAPLG00000009123
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009525
26610417 - 26637977
27561