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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26636773_26637531_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26636773 - 26637531
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTTTTCCATT
Flanking Amino Acid:
LGTQPYFFNKQPTELDALVF
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
53.3
0.19
1.9
79.05
38

Associated Gene:

Gene:
MTX2
Ensembl Gene ID:
ENSAPLG00000009123
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009525
26610417 - 26637977
27561