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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_266769_268145_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
266769 - 268145
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCTCTCATTT
Flanking Amino Acid:
QNPYAIYASKGIGEAGLFLG
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49.1
0.01
1.8
68.97
42.5

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025359
264624 - 306968
42345
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099