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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_268567_269637_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
268567 - 269637
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTTTTTCATT
Flanking Amino Acid:
SINPAVDIGQAGPQTSSVQH
Intron Amino Acid Position:
1206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
90.5
0.91
0.7
85.9
26.9
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
54.5
0.22
1.7
69.97
42.5

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009339
268146 - 306968
38823