About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_26891807_26893918_F

Intron Information:

Intron Rank:
138298
Intron Class:
major
Intron Phase:
Intron Coordinates:
26891807 - 26893918
Intron Length:
2112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCACTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
ATTTCTATTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.3
28.1
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
72.8
0.51
0.8
64.5
36.4
Minor 5ss
40.6
-1.1
2.8
52.6
44.6
Minor BPS
60.7
0.42
1.9
83.45
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024408
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032318
26874266 - 26894422
20157